PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G19030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 112aa    MW: 12206.2 Da    PI: 10.4608
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G19030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA252.7e-082191835
             GATA 18 gnktLCnaCGlyyrkkgl 35
                     g+ktLCnaCG++y++ +l
  LPERR05G19030.1  2 GPKTLCNACGVRYKSGRL 19
                     89************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-5242No hitNo description
Gene3DG3DSA:3.30.50.101.4E-4217IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVVSKHSNSH RKVVELRRQK EMQLMHHQQP  60
HHVAAGGVAG GMLHVANPLL FDGPSAPPLI AGAAADEFLI HNRIGPDFRQ LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306116e-79AC130611.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0483D07, complete sequence.
GenBankAC1324916e-79AC132491.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0599F04, complete sequence.
GenBankAP0149616e-79AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-79CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8376646e-79CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638019.11e-50PREDICTED: GATA transcription factor 12
SwissprotP697819e-37GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0D9WIS71e-78A0A0D9WIS7_9ORYZ; Uncharacterized protein
STRINGORGLA05G0202900.12e-50(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-37GATA transcription factor 12